Editorial for Emerging Computational Methods for the Life Sciences Workshop Special Issue 2012
نویسندگان
چکیده
This paper surveys the contents of the special issue on Emerging Computational Methods for the Life Sciences Workshop 2012 with six contributed papers. They cover a rich variety of topics on interface of life sciences and data intensive computation which in detail are parallelization with GPU and multicore of an important tandem mass spectrometry peptide identification tool MyriMatch; enhancement of approximate Bayesian Computation (ABC) to estimate distributions of parameter values for mechanistic model of biological systems such as kinetic rates in a parallel environment; study of high-throughput virtual screening using a parallel version of Autodock4 to screen one-million compounds; GPU version for computation of mutual information and its normalization for biomolecular sequence alignments; a workflow environment to support parameter sweeps with a biomedical application; a browser of proteomic sequences using Multi-Dimensional Scaling to map sequences to three dimensions in a way that approximately preserves distances between sequences.
منابع مشابه
Emerging Computational Methods for the Life Sciences Workshop Special Issue
were all enhanced over the conference versions and separately reviewed. I would like to thank Ian Foster and Geoffrey Fox for their help putting this special issue together.
متن کاملSpecial Issue for Emerging Computational Methods for the Life Sciences Workshop
This paper surveys the contents of the special issue on Emerging Computational Methods for the Life Sciences Workshop with six contributed papers. They cover a rich variety of topics on interface of life sciences and computation which in detail are parallelizing two popular micro array data analysis techniques using the Simple Parallel R Interface (SPRINT); parallelization of PEMer structural v...
متن کاملEmerging Computational Methods for the Life Sciences Workshop 2012
Computing systems are rapidly changing with multicore, graphics processing units (GPUs), clusters, volunteer systems, clouds, and grids offering a confusing dazzling array of opportunities. New programming paradigms such as Google MapReduce and many-task computing have joined the traditional repertoire of workflow and parallel computing for the highest performance systems. Meanwhile, the life s...
متن کاملEditorial for Special Issue of Microbiota
Editorial for Special Issue of Microbiota Bagher Larijani Professor, Endocrinology and Metabolism Research Center, Endocrinology and Metabolism Clinical Sciences Institute, Tehran University of Medical Sciences, Tehran, Iran
متن کاملEditorial for the Special Issue on Automated Design and Assessment of Heuristic Search Methods
Heuristic search algorithms have been successfully applied to solve many problems in practice. Their design, however, has increased in complexity as the number of parameters and choices for operators and algorithmic components is also expanding. There is clearly the need of providing the final user with automated tools to assist the tuning, design and assessment of heuristic optimisation method...
متن کاملذخیره در منابع من
با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید
عنوان ژورنال:
دوره شماره
صفحات -
تاریخ انتشار 2013